Predicting Anticancer Drug Responses Using a Dual-Layer Integrated Cell Line-Drug Network Model

Naiqian Zhang, Haiyun Wang, Yun Fang, +3

PLoS Computational Biology

Drug TargetEngineeringAnticancer Drug ResponsesTumor BiologyComputational Medicine +17

Landscape of B cell immunity and related immune evasion in human cancers

Xihao Hu, Jian Zhang, Jin Wang, +17

Nature Genetics

Cancer ImmunosurveillanceB Cell ImmunityImmunologyTumor ImmunityImmunoediting +5

The intratumor mycobiome promotes lung cancer progression via myeloid-derived suppressor cells

Ning‐Ning Liu, Chengxiang Yi, Luqi Wei, +22

Cancer Cell

Tumor BiologyIntratumor Mycobiome PromotesLung InflammationMedicineCancer Progression +9

Anticancer drug sensitivity prediction in cell lines from baseline gene expression through recursive feature selection

Zuoli Dong, Naiqian Zhang, Chun Li, +4

BMC Cancer

Prediction of protein structural class for low-similarity sequences using support vector machine and PSI-BLAST profile

Taigang Liu, Xiaoqi Zheng, Jun Wang

Biochimie

GeneticsMolecular BiologyGenomicsSequence AlignmentGene Recognition +14

Estimating and accounting for tumor purity in the analysis of DNA methylation data from cancer studies

Xiaoqi Zheng, Naiqian Zhang, Hua‐Jun Wu, +1

Genome biology

The nuclear matrix protein HNRNPU maintains 3D genome architecture globally in mouse hepatocytes

Hui Fan, Pin Lv, Xiangru Huo, +10

Genome Research

GeneticsGenomic MechanismMolecular BiologyEpigeneticsChromatin Architecture +19

MethylPurify: tumor purity deconvolution and differential methylation detection from single tumor DNA methylomes

Xiaoqi Zheng, Qian Zhao, Wu Huajun, +15

Genome biology

Accurate prediction of protein structural class using auto covariance transformation of PSI-BLAST profiles

Taigang Liu, Xingbo Geng, Xiaoqi Zheng, +2

Amino Acids

BioinformaticsStructural BioinformaticsBiomolecular Structure PredictionMedicineGenetics +13

InfiniumPurify: An R package for estimating and accounting for tumor purity in cancer methylation research

Yufang Qin, Hao Feng, Ming Chen, +2

Genes & Diseases

EngineeringPathologyCancer BiologyEpigeneticsTumor Biology +17