Mariah Salcedo

Transcriptomic evidence of immune activation in macroscopically normal-appearing and scarred lung tissues in idiopathic pulmonary fibrosis

Irina G. Luzina, Mariah Salcedo, Mónica L. Rojas-Peña et al. · Cellular Immunology · 2018 · 63 citations · Full text

Inflammation, Fibrosis, Transcriptomic Evidence +12

Phosformer: an explainable transformer model for protein kinase-specific phosphorylation predictions

Zhongliang Zhou, Wayland Yeung, Nathan Gravel et al. · Bioinformatics · 2023 · 29 citations · Full text

Tree visualizations of protein sequence embedding space enable improved functional clustering of diverse protein superfamilies

Wayland Yeung, Zhongliang Zhou, Liju Mathew et al. · Briefings in Bioinformatics · 2023 · 23 citations · Full text

Engineering, Molecular Biology, Protein Language Models +21

The full-length interleukin-33 (FLIL33)–importin-5 interaction does not regulate nuclear localization of FLIL33 but controls its intracellular degradation

Andrew Clerman, Zahid Noor, Rita Fishelevich et al. · Journal of Biological Chemistry · 2017 · 19 citations · Full text

Using explainable machine learning to uncover the kinase–substrate interaction landscape

Zhongliang Zhou, Wayland Yeung, Saber Soleymani et al. · Bioinformatics · 2024 · 11 citations · Full text