Discovery and Genomic Characterization of a 382-Nucleotide Deletion in ORF7b and ORF8 during the Early Evolution of SARS-CoV-2

Yvonne C. F. Su, Danielle E. Anderson, Barnaby Edward Young, +22

mBio

Global Population Structure and Evolution of Bordetella pertussis and Their Relationship with Vaccination

Marieke J Bart, Simon R. Harris, Abdolreza Advani, +35

mBio

VaccinationPathogen AdaptationInfectious Disease EcologyEmerging Infectious DiseasesBordetella Pertussis +12

Rapid Increase in Pertactin-deficient<i>Bordetella pertussis</i>Isolates, Australia

Connie Lam, Sophie Octavia, Lawrence Ricafort, +11

Emerging infectious diseases

VaccinationVaccine DevelopmentBordetella PertussisMedicineZoonotic Disease +13

Newly Emerging Clones of Bordetella pertussis Carrying prn2 and ptxP3 Alleles Implicated in Australian Pertussis Epidemic in 2008–2010

Sophie Octavia, Vitali Sintchenko, Gwendolyn L. Gilbert, +4

The Journal of Infectious Diseases

VaccinationInfectious Disease EpidemiologyProlonged EpidemicAustralian Pertussis EpidemicEmerging Infectious Diseases +12

Pertactin negative Bordetella pertussis demonstrates higher fitness under vaccine selection pressure in a mixed infection model

Azadeh Safarchi, Sophie Octavia, Laurence Don Wai Luu, +6

Vaccine

VaccinationVaccine DevelopmentVaccine Selection PressureImmunologyInfection Control +5

Investigation of the Enteric Pathogenic Potential of Oral Campylobacter concisus Strains Isolated from Patients with Inflammatory Bowel Disease

Yazan Ismail, Vikneswari Mahendran, Sophie Octavia, +7

PLoS ONE

Delineating Community Outbreaks of Salmonella enterica Serovar Typhimurium by Use of Whole-Genome Sequencing: Insights into Genomic Variability within an Outbreak

Sophie Octavia, Qinning Wang, Mark M. Tanaka, +3

Journal of Clinical Microbiology

Insight into Evolution of Bordetella pertussis from Comparative Genomic Analysis: Evidence of Vaccine-Driven Selection

Sophie Octavia, Ram P. Maharjan, Vitali Sintchenko, +4

Molecular Biology and Evolution

Bacterial PathogensB. PertussisReverse VaccinologyMolecular EcologyVaccine Target +14

Population Structure and Evolution of Non-O1/Non-O139 Vibrio cholerae by Multilocus Sequence Typing

Sophie Octavia, Anna C. M. Salim, Jacob Kurniawan, +6

PLoS ONE

Microbial PathogensPathogen DetectionSporadic Cholera IsolatesBacterial PathogensPathogen Biology +19

Population structure and virulence content of avian pathogenic Escherichia coli isolated from outbreaks in Sri Lanka

D. R. A. Dissanayake, Sophie Octavia, Ruiting Lan

Veterinary Microbiology

Pathogen TransmissionPoultry DiseasePathogenesisPopulation StructurePathogen Characterization +6