Jeffrey A. Ruffolo

ProGen2: Exploring the boundaries of protein language models

Erik Nijkamp, Jeffrey A. Ruffolo, Eli N. Weinstein et al. · Cell Systems · 2023 · 367 citations · Full text

Engineering, Computational Linguistics, Computational Biology +9

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

Jeffrey A. Ruffolo, Lee‐Shin Chu, Sai Pooja Mahajan et al. · Nature Communications · 2023 · 282 citations · Full text

Natural Antibodies, Engineering, Machine Learning +11

Antibody structure prediction using interpretable deep learning

Jeffrey A. Ruffolo, Jeremias Sulam, Jeffrey J. Gray · Patterns · 2021 · 201 citations · Full text

IgLM: Infilling language modeling for antibody sequence design

Richard W. Shuai, Jeffrey A. Ruffolo, Jeffrey J. Gray · Cell Systems · 2023 · 107 citations · Full text

Natural Language Processing, Engineering, Antibody Sequence Design +9

Deciphering antibody affinity maturation with language models and weakly supervised learning

Jeffrey A. Ruffolo, Jeffrey J. Gray, Jeremias Sulam · arXiv (Cornell University) · 2021 · 89 citations · Full text

Engineering, Machine Learning, Adaptive Immune System +17