Mammalian microRNAs: experimental evaluation of novel and previously annotated genes

Hou‐Yu Chiang, Lori W. Schoenfeld, J. Graham Ruby, +11

Genes & Development

A robust benchmark for detection of germline large deletions and insertions

Justin M. Zook, Nancy F. Hansen, Nathan D. Olson, +47

Nature Biotechnology

EngineeringData ScienceData MiningGermline Large DeletionsComputational Biology +5

3′ UTR-isoform choice has limited influence on the stability and translational efficiency of most mRNAs in mouse fibroblasts

Noah Spies, Christopher B. Burge, David P. Bartel

Genome Research

TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the Schizosaccharomyces pombe siRNA pathway

Marc Bühler, Noah Spies, David P. Bartel, +1

Nature Structural & Molecular Biology

Natural SciencesGeneticsRna Binding ProteinsRna BiologyMolecular Biology +7

Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562

Bo Zhou, Steve S. Ho, Stephanie Greer, +16

Genome Research

svclassify: a method to establish benchmark structural variant calls

Hemang Parikh, Marghoob Mohiyuddin, Hugo Y. K. Lam, +8

BMC Genomics

Extensive sequencing of seven human genomes to characterize benchmark reference materials

Justin M. Zook, David Catoe, Jennifer McDaniel, +46

EngineeringBenchmark Reference MaterialsGeneticsMolecular BiologyGenomics +22

A robust benchmark for germline structural variant detection

Justin M. Zook, Nancy F. Hansen, Nathan D. Olson, +47

EngineeringGeneticsMolecular BiologyMolecular GeneticsGenomics +22

Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2

Bo Zhou, Steve S. Ho, Stephanie Greer, +15

Nucleic Acids Research

svviz: a read viewer for validating structural variants

Noah Spies, Justin M. Zook, Marc Salit, +1

Bioinformatics