Carlus Deneke

Development of a Novel mcr-6 to mcr-9 Multiplex PCR and Assessment of mcr-1 to mcr-9 Occurrence in Colistin-Resistant Salmonella enterica Isolates From Environment, Feed, Animals and Food (2011–2018) in Germany

Maria Borowiak, Beatrice Baumann, Jennie Fischer et al. · Frontiers in Microbiology · 2020 · 188 citations · Full text

Life Sciences, Infectious Diseases, Microbiology +17

PaPrBaG: A machine learning approach for the detection of novel pathogens from NGS data

Carlus Deneke, Robert Rentzsch, Bernhard Y. Renard · Scientific Reports · 2017 · 108 citations · Full text

Life Sciences, Bioinformatics, Microbiology +15

Species-Specific Quality Control, Assembly and Contamination Detection in Microbial Isolate Sequences with AQUAMIS

Carlus Deneke, Holger Brendebach, Laura Uelze et al. · Genes · 2021 · 99 citations · Full text

Life Sciences, Microbiology, Genome Assembly +14

Fishing in the Soup – Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing

Josephine Grützke, Burkhard Malorny, Jens A. Hammerl et al. · Frontiers in Microbiology · 2019 · 69 citations · Full text

Agriculture, Food Science, Microbiology +17

Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal Escherichia coli

Katharina Juraschek, Maria Borowiak, Simon H. Tausch et al. · Microorganisms · 2021 · 57 citations · Full text

Life Sciences, Genetics, Microbiology +17