Ferhat Alkan

CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parameters

Ferhat Alkan, Anne Wenzel, Christian Anthon et al. · Genome biology · 2018 · 169 citations · Full text

RAIN: RNA–protein Association and Interaction Networks

Alexander Junge, Jan C. Refsgaard, Christian Garde et al. · Database · 2016 · 119 citations · Full text

Engineering, Genetics, Gene Regulatory Network +20

Good guide, bad guide: spacer sequence-dependent cleavage efficiency of Cas12a

Sjoerd C.A. Creutzburg, Wen Y. Wu, Prarthana Mohanraju et al. · Nucleic Acids Research · 2020 · 102 citations · Full text

Engineering, Structural Bioinformatics, Biomolecular Structure Prediction +15

RIsearch2: suffix array-based large-scale prediction of RNA–RNA interactions and siRNA off-targets

Ferhat Alkan, Anne Wenzel, Oana Palasca et al. · Nucleic Acids Research · 2016 · 100 citations · Full text

Engineering, Genetics, Molecular Biology +17

CRISPR/Cas9 gRNA activity depends on free energy changes and on the target PAM context

Giulia I. Corsi, Kunli Qu, Ferhat Alkan et al. · Nature Communications · 2022 · 93 citations · Full text