Community-led, integrated, reproducible multi-omics with anvi’o

A. Murat Eren, Evan Kiefl, Alon Shaiber, +31

Nature Microbiology

EngineeringReproducible Multi-omicsComputer EngineeringIntegrated CircuitsOptical Computing

Metabolic independence drives gut microbial colonization and resilience in health and disease

Andrea R. Watson, Jessika Füssel, Iva Veseli, +17

Genome biology

High molecular weight DNA extraction strategies for long‐read sequencing of complex metagenomes

Florian Trigodet, Karen Lolans, Emily C. Fogarty, +5

Molecular Ecology Resources

GeneticsMolecular BiologyGenomicsHigh Throughput SequencingDna Sequencing +15

Metabolic independence drives gut microbial colonization and resilience in health and disease

Andrea R. Watson, Jessika Füssel, Iva Veseli, +17

DysbiosisHost-microbe InteractionsHuman Microbial FloraMicrobial ColonizationMicrobiome Biology +22

proovframe: frameshift-correction for long-read (meta)genomics

Thomas Hackl, Florian Trigodet, A. Murat Eren, +6

EngineeringGeneticsPresent ProovframeGenomicsSequence Alignment +16

Electroactive Bacteria Associated With Stainless Steel Ennoblement in Seawater

Florian Trigodet, Nicolas Larché, Hilary G. Morrison, +3

Frontiers in Microbiology

The mosquito microbiome includes habitat-specific but rare symbionts

Hans Schrieke, Loïs Maignien, Florentin Constancias, +11

Computational and Structural Biotechnology Journal

Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples

Natalie J. Wu-Woods, Jacob T. Barlow, Florian Trigodet, +5

Nature Methods

Microbial DiversityMicrobial EcologyEnvironmental MicrobiologyMicrobiologyMicrobiome +3

Dynamic genetic adaptation of Bacteroides thetaiotaomicron during murine gut colonization

Megan S. Kennedy, Manjing Zhang, Orlando DeLeon, +13

Cell Reports

Bile acid fitness determinants of a <i>Bacteroides fragilis</i> isolate from a human pouchitis patient

Aretha Fiebig, Matthew K. Schnizlein, Selymar Pena-Rivera, +11

mBio