Jakub Rydzewski - Concepedia

Author

Jakub Rydzewski

Nicolaus Copernicus University ORCID

Also Known As

J. Rydzewski, Jakub Rydzewski, Jakub Rydzewski (10802795), Rydzewski, Jakub, Stefano Raniolo

Publications

1.6K

Citations

H-Index

Concepts

All Affiliations

Nicolaus Copernicus University Institute of Physics FZU ‒ Institute of Physics of the Academy of Sciences of the Czech Republic University of North Texas

About

Jakub Rydzewski is an author at Nicolaus Copernicus University specializing in engineering, biophysics, and computational chemistry.

Top Concepts

#	Concept	H-Index	Publications	Citations
1	Engineering	7	7	185
2	Biochemistry	4	4	110
3	Medicine	3	3	79
4	Natural Sciences	2	2	49
5	Chemical Biology	1	1	14

Jakub Rydzewski

Publications

254

Citations

H-Index

Page 1

	Year	Citations
Machine Learning Based Dimensionality Reduction Facilitates Ligand Diffusion Paths Assessment: A Case of Cytochrome P450cam Jakub Rydzewski, Wiesław Nowak Journal of Chemical Theory and Computation EngineeringMachine LearningMolecular BiologyComputational ChemistryMolecular Dynamics	2016	47
Multiscale Reweighted Stochastic Embedding: Deep Learning of Collective Variables for Enhanced Sampling Jakub Rydzewski, Ómar Valsson The Journal of Physical Chemistry A Free EnergyGeometric LearningData AugmentationFree Energy LandscapeEngineering	2021	42
Kinetics of Huperzine A Dissociation from Acetylcholinesterase via Multiple Unbinding Pathways Jakub Rydzewski, Rafał Jakubowski, Wiesław Nowak, Journal of Chemical Theory and Computation EngineeringUnbiased Md SimulationsComputational ChemistryMolecular DynamicsMolecular Simulation	2018	35
PLUMED Tutorials: A collaborative, community-driven learning ecosystem Gareth A. Tribello, Massimiliano Bonomi, Giovanni Bussi, The Journal of Chemical Physics	2025	23
Reweighted Manifold Learning of Collective Variables from Enhanced Sampling Simulations Jakub Rydzewski, Ming Chen, Tushar K. Ghosh, Journal of Chemical Theory and Computation EngineeringMachine LearningManifold ModelingComputational ChemistryMarkov Chain Monte Carlo	2022	18
Spectral Map: Embedding Slow Kinetics in Collective Variables Jakub Rydzewski The Journal of Physical Chemistry Letters Spectral TheoryGeometric LearningEngineeringMachine LearningPhysics	2023	15
Communication: Entropic measure to prevent energy over-minimization in molecular dynamics simulations Jakub Rydzewski, Rafał Jakubowski, Wiesław Nowak The Journal of Chemical Physics Free EnergyEngineeringEntropic MeasureMolecular BiologyComputational Chemistry	2015	14
Thermodynamics of camphor migration in cytochrome P450cam by atomistic simulations Jakub Rydzewski, Wiesław Nowak Scientific Reports EngineeringComputational ChemistryChemical BiologyMolecular DynamicsBioenergetics	2017	14
maze: Heterogeneous ligand unbinding along transient protein tunnels Jakub Rydzewski Computer Physics Communications Molecular BiologyProtein TransportTransient Protein TunnelsIntracellular TraffickingMulti-protein Assembly	2019	13
Inhibition-mediated changes in prolyl oligopeptidase dynamics possibly related to α-synuclein aggregation Katarzyna Walczewska-Szewc, Jakub Rydzewski, Aneta Lewkowicz Physical Chemistry Chemical Physics	2022	11

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