Ruochi Zhang - Concepedia

Author

Ruochi Zhang

Carnegie Mellon University ORCID

Also Known As

Ruochi Zhang, Zhang, Ruochi

Publications

1.5K

Citations

H-Index

Concepts

All Affiliations

Carnegie Mellon University Broad Institute University of Washington Oncode Institute University of Illinois Urbana-Champaign

About

Ruochi Zhang is an author at Carnegie Mellon University specializing in computational biology, medicine, and bioinformatics.

Top Concepts

#	Concept	H-Index	Publications	Citations
1	Medicine	7	7	429
2	Engineering	5	5	122
3	Natural Sciences	3	3	306
4	Business	1	1	31
5	Public Health	1	1	12

Ruochi Zhang

Publications

1.4K

Citations

H-Index

Page 1

	Year	Citations
CHANGE-seq reveals genetic and epigenetic effects on CRISPR–Cas9 genome-wide activity Cícera R. Lazzarotto, Nikolay Malinin, Yichao Li, Nature Biotechnology MedicineGeneticsNatural SciencesEpigenomicsMolecular Biology	2020	270
A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics Haoyang Li, Juexiao Zhou, Zhongxiao Li, Nature Communications	2023	218
Multiscale and integrative single-cell Hi-C analysis with Higashi Ruochi Zhang, Tianming Zhou, Jian Ma Nature Biotechnology	2021	175
SPIN reveals genome-wide landscape of nuclear compartmentalization Yuchuan Wang, Yang Zhang, Ruochi Zhang, Genome biology	2021	128
Exploiting sequence-based features for predicting enhancer–promoter interactions Yang Yang, Ruochi Zhang, Shashank Singh, Bioinformatics	2017	127
Predicting CTCF-mediated chromatin loops using CTCF-MP Ruochi Zhang, Yuchuan Wang, Yang Yang, Bioinformatics	2018	63
Predicting the antigenic evolution of SARS-COV-2 with deep learning Wenkai Han, Ningning Chen, Xinzhou Xu, Nature Communications	2023	55
GAGE-seq concurrently profiles multiscale 3D genome organization and gene expression in single cells Tianming Zhou, Ruochi Zhang, Deyong Jia, Nature Genetics BioinformaticsChromatinFunctional GenomicsEngineeringSingle Cell Sequencing	2024	49
Ultrafast and interpretable single-cell 3D genome analysis with Fast-Higashi Ruochi Zhang, Tianming Zhou, Jian Ma Cell Systems BioinformaticsLong-read SequencingSingle Cell SequencingMedicineComputational Biology	2022	44
Multiscale footprints reveal the organization of cis-regulatory elements Hu Yan, Max A. Horlbeck, Ruochi Zhang, Nature	2025	35

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