CATH: comprehensive structural and functional annotations for genome sequences

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Nucleic Acids Research

Evolution of antibiotic resistance is linked to any genetic mechanism affecting bacterial duration of carriage

Sonja Lehtinen, François Blanquart, Nicholas J. Croucher, +3

Proceedings of the National Academy of Sciences

Estimating the effects of non-pharmaceutical interventions on the number of new infections with COVID-19 during the first epidemic wave

Nicolas Banholzer, Eva van Weenen, Adrian Lison, +9

PLoS ONE

First Epidemic WaveEpidemiological DynamicCovid-19 EpidemiologyCovid-19Relative Reduction +17

Quantifying the impact of quarantine duration on COVID-19 transmission

Peter Ashcroft, Sonja Lehtinen, Daniel C. Angst, +2

eLife

Incubation PeriodVirus EpidemiologyEpidemiological DynamicEconomic CostsCovid-19 Epidemiology +14

On the relationship between serial interval, infectiousness profile and generation time

Sonja Lehtinen, Peter Ashcroft, Sebastian Bonhoeffer

Journal of The Royal Society Interface

Viral DynamicEpidemiological DynamicDisease OutbreakGeneration TimeMost Pathogens +16

On the evolutionary ecology of multidrug resistance in bacteria

Sonja Lehtinen, François Blanquart, Marc Lipsitch, +1

PLoS Pathogens

Strain EcologyAntimicrobial Resistance GeneHealth SciencesAntibioticsMedicine +10

Gene3D: expanding the utility of domain assignments

Su Datt Lam, Natalie L. Dawson, Sayoni Das, +6

Nucleic Acids Research

The evolution of antibiotic resistance in a structured host population

François Blanquart, Sonja Lehtinen, Marc Lipsitch, +1

Journal of The Royal Society Interface

Mathematical modelling for antibiotic resistance control policy: do we know enough?

Gwenan M. Knight, Nicholas G. Davies, Caroline Colijn, +16

BMC Infectious Diseases

Estimating the effects of non-pharmaceutical interventions on the number of new infections with COVID-19 during the first epidemic wave

Nicolas Banholzer, Eva van Weenen, Adrian Lison, +9

First Epidemic WaveEpidemiological DynamicCovid-19 EpidemiologyCovid-19Infectious Disease Modelling +18