Evolutionarily Conserved Principles Predict 3D Chromatin Organization

M. Jordan Rowley, Michael H. Nichols, Xiaowen Lyu, +6

Molecular Cell

ChromatinPattern FormationChromatin OrganizationChromatin StructureCell Division +9

Widespread Rearrangement of 3D Chromatin Organization Underlies Polycomb-Mediated Stress-Induced Silencing

Li Li, Xiaowen Lyu, Chunhui Hou, +9

Molecular Cell

ChromatinGenome InstabilityChromatin StructureChromatin RemodelingWidespread Rearrangement +8

Chromatin States in Mouse Sperm Correlate with Embryonic and Adult Regulatory Landscapes

Yoon Hee Jung, Michael E.G. Sauria, Xiaowen Lyu, +4

Cell Reports

Replication timing maintains the global epigenetic state in human cells

Kyle N. Klein, Peiyao A Zhao, Xiaowen Lyu, +17

Science

Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture

Caelin Cubeñas-Potts, M. Jordan Rowley, Xiaowen Lyu, +3

Nucleic Acids Research

GeneticsDcp EnhancersGene Regulatory NetworkEpigeneticsTranscriptional Regulation +18

Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State during Somatic Cell Reprogramming

Jonathan A. Beagan, Thomas G. Gilgenast, Jesi Kim, +11

Cell stem cell

ChromatinPattern FormationCell DivisionProtein FoldingNatural Sciences +9

Condensin II Counteracts Cohesin and RNA Polymerase II in the Establishment of 3D Chromatin Organization

M. Jordan Rowley, Xiaowen Lyu, Vibhuti Rana, +4

Cell Reports

Maintenance of CTCF- and Transcription Factor-Mediated Interactions from the Gametes to the Early Mouse Embryo

Yoon Hee Jung, Isaac Kremsky, Hannah B. Gold, +7

Molecular Cell

Developmental BiologyTranscription Factor-mediated InteractionsEarly Mouse EmbryoEmbryonic DevelopmentCell Fate Determination +6

Architectural Proteins and Pluripotency Factors Cooperate to Orchestrate the Transcriptional Response of hESCs to Temperature Stress

Xiaowen Lyu, M. Jordan Rowley, Victor G. Corces

Molecular Cell

Transcriptional RegulationProtein FunctionProtein ExpressionNatural SciencesMedicine +9

Ecdysone-Induced 3D Chromatin Reorganization Involves Active Enhancers Bound by Pipsqueak and Polycomb

Irene Gutiérrez-Pérez, M. Jordan Rowley, Xiaowen Lyu, +8

Cell Reports