PLoS ONE · 2015 · 55 citations · 58 references
Life SciencesBiologyBiological Systems ModelingFish BiologyFish Population DynamicsDynamic Systems ModelingEcological ModelingFish Population BiologyPopulation Dynamics ModelingPopulation ModelingDynamic Energy Budget ModelsDynamic Energy Budget TheoryEcological Risk Assessment ModelsIndividual-based ModelsIndividual-based Population ModelsInterpreting Experimental Data
Developing population dynamics models for zebrafish is crucial in order to extrapolate from toxicity data measured at the organism level to biological levels relevant to support and enhance ecological risk assessment. To achieve this, a dynamic energy budget for individual zebrafish (DEB model) was coupled to an individual based model of zebrafish population dynamics (IBM model). Next, we fitted the DEB model to new experimental data on zebrafish growth and reproduction thus improving existing models. We further analysed the DEB-model and DEB-IBM using a sensitivity analysis. Finally, the predictions of the DEB-IBM were compared to existing observations on natural zebrafish populations and the predicted population dynamics are realistic. While our zebrafish DEB-IBM model can still be improved by acquiring new experimental data on the most uncertain processes (e.g. survival or feeding), it can already serve to predict the impact of compounds at the population level.
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R: A Language and Environment for Statistical Computing
R Core Team · 2000 · 353K citations · Full text
Natural Sciences, Computer Science, Statistical Computing +10
Stages of embryonic development of the zebrafish
Charles B. Kimmel, William W. Ballard, Seth R. Kimmel et al. · Developmental Dynamics · 1995 · 12.3K citations