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Phenotypic landscape of an invasive fungal pathogen reveals its unique biology

Michael J. Boucher, Sanjita Banerjee, Meenakshi B Joshi, Angela Wei, Matthew J. Nalley, Manning Y. Huang, Susan Lei, Massimiliano Ciranni, Thomas D. Goddard, Ippolito Caradonna,

Cell · 2025 · 10 citations · 161 references

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161

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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Fiji: an open-source platform for biological-image analysis

Johannes Schindelin, Ignacio Arganda‐Carreras, Erwin Frise et al. · Nature Methods · 2012 · 70.9K citations

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Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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Cutadapt removes adapter sequences from high-throughput sequencing reads

Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text

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Minimap2: pairwise alignment for nucleotide sequences

Heng Li · Bioinformatics · 2018 · 16.8K citations · Full text

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