Benchmarking large language models for biomedical natural language processing applications and recommendations

References

Page 1

	Year	Citations
SciPy 1.0: fundamental algorithms for scientific computing in Python Nature Methods	2020	35.1K
BioBERT: a pre-trained biomedical language representation model for biomedical text mining Jinhyuk Lee, Wonjin Yoon, Sungdong Kim, Bioinformatics	2019	6.5K
Training language models to follow instructions with human feedback Long Ouyang, Jeff Wu, Xu Jiang, arXiv (Cornell University) Artificial IntelligenceLlm Fine-tuningEngineeringMachine LearningInstructgpt Models	2022	4.2K
Large language models encode clinical knowledge Karan Singhal, Shekoofeh Azizi, Tao Tu, Nature	2023	2.6K
Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing Robert Tinn, Hao Cheng, Michael Lucas, ACM Transactions on Computing for Healthcare Llm Fine-tuningEngineeringMachine LearningPo TaggingMultilingual Pretraining	2021	1.9K
BioGPT: generative pre-trained transformer for biomedical text generation and mining Renqian Luo, Liai Sun, Yingce Xia, Briefings in Bioinformatics Llm Fine-tuningEngineeringMachine LearningMultilingual PretrainingLarge Language Model	2022	920
BioCreative V CDR task corpus: a resource for chemical disease relation extraction Jiao Li, Yueping Sun, Robin J. Johnson, Database	2016	856
Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets Yifan Peng, Shankai Yan, Zhiyong Lu Llm Fine-tuningEngineeringMachine LearningMultilingual PretrainingTen Benchmarking Datasets	2019	820
NCBI disease corpus: A resource for disease name recognition and concept normalization Rezarta Islamaj, Robert Leaman, Zhiyong Lu Journal of Biomedical Informatics Disease Name RecognitionEngineeringDiagnosisPathologyDisease Classification	2014	814
PubMedQA: A Dataset for Biomedical Research Question Answering Qiao Jin, Bhuwan Dhingra, Zhengping Liu, Natural Language ProcessingApplied LinguisticsHealth InformaticsEngineeringQuestion Answering	2019	513

Page 1