Microplastics reduced the natural attenuation of antibiotic resistance genes in fertilized soils

fastp: an ultra-fast all-in-one FASTQ preprocessor

Shifu Chen, Yanqing Zhou, Yaru Chen et al. · Bioinformatics · 2018 · 29.7K citations · Full text

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Prodigal: prokaryotic gene recognition and translation initiation site identification

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Life Sciences, Bioinformatics, Microbiology +13

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

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Life Sciences, Biology, Microbiology +17

Improved metagenomic analysis with Kraken 2

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Life Sciences, Bioinformatics, Microbiology +11

dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication

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Life Sciences, Bioinformatics, Genetics +14