Concepedia

A robustly rooted tree of eukaryotes reveals their excavate ancestry

Kelsey Williamson, Laura Eme, Hector Baños, Charley McCarthy, Edward Susko, Ryoma Kamikawa, Russell J. S. Orr, Sergio A. Muñoz-Gómez, Bùi Quang Minh, Alastair G. B. Simpson,

Nature · 2025 · 70 citations · 60 references

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60

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh, Daron M. Standley · Molecular Biology and Evolution · 2013 · 48.3K citations · Full text

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IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler et al. · Molecular Biology and Evolution · 2014 · 27.5K citations · Full text

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New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

Stéphane Guindon, Jean-François Dufayard, Vincent Lefort et al. · Systematic Biology · 2010 · 19K citations · Full text

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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Bùi Quang Minh, Heiko A. Schmidt, Olga Chernomor et al. · Molecular Biology and Evolution · 2020 · 16.8K citations · Full text

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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón · Bioinformatics · 2009 · 13.6K citations · Full text

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