Concepedia

The performance of nanopore sequencing in rapid detection of pathogens and antimicrobial resistance genes in blood cultures

Jing Wang, Xiaohua Qin, Meilin Duan, Minggui Wang, Yuanlin Guan, Xiaogang Xu

Diagnostic Microbiology and Infectious Disease · 2025 · 12 citations · 23 references

DOI

Concepts

References

23

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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Minimap2: pairwise alignment for nucleotide sequences

Heng Li · Bioinformatics · 2018 · 16.8K citations · Full text

, , +17

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

Ryan R. Wick, Louise M. Judd, Claire L. Gorrie et al. · PLoS Computational Biology · 2017 · 8.8K citations · Full text

, , +15

Improved metagenomic analysis with Kraken 2

Derrick E. Wood, Jennifer Lu, Ben Langmead · Genome biology · 2019 · 7.1K citations · Full text

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NanoPack: visualizing and processing long-read sequencing data

Wouter De Coster, Svenn D’Hert, Darrin T. Schultz et al. · Bioinformatics · 2018 · 3.3K citations · Full text

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