Emerging infectious diseases · 2024 · 19 citations · 37 references
Life SciencesInfectious DiseasesMicrobiologyAntimicrobial ResistanceMedical MicrobiologyMicrobial GeneticsAntibacterial ResistanceAntibiotic ResistanceAntibiotic Resistance MechanismsCarbapenem ResistancePlasmid GeneticsPlasmid-mediated ResistanceBacterial Multidrug ResistanceCarbapenem Resistance MechanismsCarbapenem Resistance PlasmidsKlebsiella Pneumoniae CarbapenemaseKlebsiella Pneumoniae ResistanceMultidrug Resistance PlasmidsPlasmid-mediated Resistance TransferResistance Plasmid Transfer
-fec-E. coli cells treated with ferric citrate. Screening of 27,793 K. pneumoniae whole-genome sequences revealed that the fec cluster occurs frequently in some globally distributed different KPC-producing K. pneumoniae clones (sequence types 258, 14, 45, and 512), contributing to reduced FDC susceptibility.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Prokka: rapid prokaryotic genome annotation
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ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy, Bùi Quang Minh, Thomas K. F. Wong et al. · Nature Methods · 2017 · 18.8K citations