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A microglia-containing cerebral organoid model to study early life immune challenges

Alice Buonfiglioli, Raphael Kübler, Roy Missall, Renske de Jong, Stephanie C. Y. Chan, Verena Haage, Stefan Wendt, Ada J. Lin, Daniele Mattei, Mara Graziani,

Brain Behavior and Immunity · 2024 · 28 citations · 72 references

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72

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

, , +17

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

Guangchuang Yu, Li-Gen Wang, Yanyan Han et al. · OMICS A Journal of Integrative Biology · 2012 · 38.3K citations

, , +13

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

Yang Liao, Gordon K. Smyth, Wei Shi · Bioinformatics · 2013 · 29.1K citations · Full text

, , +14

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

Zuguang Gu, Roland Eils, Matthias Schlesner · Bioinformatics · 2016 · 10.9K citations · Full text

, , +16