bioRxiv (Cold Spring Harbor Laboratory) · 2024 · 31 citations · 140 references
Life SciencesBiochemistryMolecular BiologyCellular MetabolismEnzyme MechanismEnzymologyAtp HydrolysisCatalytic MechanismsEnzyme BiophysicsEnzyme FunctionProtein CondensatesSupramolecular CatalysisAtp Hydrolysis MechanismHydrolysisHydrolysis PathwaysHydrolysis ReactionsProtein Sequence DesignTranscriptional CondensatesTranscriptional Regulation Circuits
We report the discovery that chemical reactions can be catalyzed by condensates formed by intrinsically disordered proteins (IDPs). The proteins themselves lack any catalytic activities. Catalytic functions of condensates emerge as a consequence of sequence-dependent mesoscale electrochemical microenvironments created by phase separation. Stimulated Raman spectroscopy suggests that the catalytic behaviors of condensates are attributable to the spatial variations of water activities across condensate interiors and interfaces. We show that condensates are capable of catalyzing diverse cellularly relevant hydrolysis reactions. Through sequence design, the electrochemical properties of condensates can be programmed to exert control over catalytic behaviors. Incorporation of synthetic condensates into live cells alters transcription profiles and enables the activation of gene circuits that depend on products of hydrolysis reactions catalyzed by condensates. Our discovery of suggests that condensates, depending on their composition-dependent electrochemical properties, can be "Condenzymes", which contribute unexpected emergent chemical functions in cells.
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Electric Moments of Molecules in Liquids
Lars Onsager · Journal of the American Chemical Society · 1936 · 5.3K citations
Phase transitions in the assembly of multivalent signalling proteins
Pilong Li, Sudeep Banjade, Hui-Chun Cheng et al. · Nature · 2012 · 2.7K citations