Nature Communications · 2024 · 42 citations · 46 references
AgricultureCrop SciencesPlant SciencesCereal SciencePlant GeneticsPlant Molecular BiologyAbiotic Stress ToleranceHeat Stress ToleranceHeat Tolerance BreedingHeat Stress In CropsHeat Stress Response GenesHeat Stress ResponsesHeat Tolerance GeneticsHeat Tolerance In WheatStress Tolerance Gene DiscoveryTemperature Stress ToleranceWheat Breeding
Abstract Heat stress threatens global wheat ( Triticum aestivum ) production, causing dramatic yield losses worldwide. Identifying heat tolerance genes and comprehending molecular mechanisms are essential. Here, we identify a heat tolerance gene, TaSG-D1 E286K , in Indian dwarf wheat ( Triticum sphaerococcum ), which encodes an STKc_GSK3 kinase. TaSG-D1 E286K improves heat tolerance compared to TaSG-D1 by enhancing phosphorylation and stability of downstream target TaPIF4 under heat stress condition. Additionally, we reveal evolutionary footprints of TaPIF4 during wheat selective breeding in China, that is, InDels predominantly occur in the TaPIF4 promoter of Chinese modern wheat cultivars and result in decreased expression level of TaPIF4 in response to heat stress. These sequence variations with negative effect on heat tolerance are mainly introduced from European germplasm. Our study provides insight into heat stress response mechanisms and proposes a potential strategy to improve wheat heat tolerance in future.
46
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Guangchuang Yu, Li-Gen Wang, Yanyan Han et al. · OMICS A Journal of Integrative Biology · 2012 · 38.3K citations
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen, Yanqing Zhou, Yaru Chen et al. · Bioinformatics · 2018 · 29.7K citations · Full text