Nature · 2024 · 178 citations · 38 references
Life SciencesGeneticsImmunologyAdaptive ImmunityEpigeneticsInnate ImmunityAdaptive Immune ResponsesCytokine BiologyCytokine RegulationCytokine SignalingInnate Immune ActivationInnate Immune ResponseAdaptive Immune Response VariabilityCytokine Expression VariabilityCytokine Response VariabilityEpigenetic MemoryInnate Cytokine ResponsesInnate Immune Response VariabilityInnate Immune Response VariationTobacco Smoking
. However, the variables that drive such differences in cytokine secretion-a crucial component of the host response to immune challenges-remain poorly defined. Here we investigated 136 variables and identified smoking, cytomegalovirus latent infection and body mass index as major contributors to variability in cytokine response, with effects of comparable magnitudes with age, sex and genetics. We find that smoking influences both innate and adaptive immune responses. Notably, its effect on innate responses is quickly lost after smoking cessation and is specifically associated with plasma levels of CEACAM6, whereas its effect on adaptive responses persists long after individuals quit smoking and is associated with epigenetic memory. This is supported by the association of the past smoking effect on cytokine responses with DNA methylation at specific signal trans-activators and regulators of metabolism. Our findings identify three novel variables associated with cytokine secretion variability and reveal roles for smoking in the short- and long-term regulation of immune responses. These results have potential clinical implications for the risk of developing infections, cancers or autoimmune diseases.
38
Population Structure and Eigenanalysis
Nick Patterson, Alkes L. Price, David Reich · PLoS Genetics · 2006 · 5.7K citations · Full text
The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
Kristin G. Ardlie, David S. DeLuca, Ayellet V. Segrè et al. · Science · 2015 · 5.7K citations · Full text
Impaired type I interferon activity and inflammatory responses in severe COVID-19 patients
Jérôme Hadjadj, Nader Yatim, Laura Barnabei et al. · Science · 2020 · 3.2K citations · Full text
Genomic atlas of the human plasma proteome
Benjamin B. Sun, Joseph Maranville, James E. Peters et al. · Nature · 2018 · 2.4K citations · Full text
Matrix eQTL: ultra fast eQTL analysis via large matrix operations
Andrey A. Shabalin · Bioinformatics · 2012 · 1.9K citations · Full text