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Pangenome analysis reveals genomic variations associated with domestication traits in broomcorn millet

Jinfeng Chen, Yang Liu, Minxuan Liu, Wenlei Guo, Yongqiang Wang, Qiang He, Weiyao Chen, Yi Liao, Wei Zhang, Yuanzhu Gao,

Nature Genetics · 2023 · 77 citations · 98 references

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References

98

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 94.7K citations · Full text

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 66.2K citations · Full text

Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 60.7K citations · Full text

KEGG: Kyoto Encyclopedia of Genes and Genomes

Minoru Kanehisa · Nucleic Acids Research · 2000 · 37.5K citations · Full text

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

Guangchuang Yu, Li-Gen Wang, Yanyan Han et al. · OMICS A Journal of Integrative Biology · 2012 · 36K citations · Full text

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