Concepedia

Pangenome Graphs

Pangenome Graphs is a computational data structure that represents the collective genomic variation of a species as a graph, where nodes correspond to genomic sequences and edges capture their adjacencies, thereby distinguishing itself from linear reference models by encoding both conserved and variable regions across multiple individuals or strains.

49

Publications

7.2K

Citations

531

Authors

211

Institutions

Publications per year

2017–2026

49

Variants

Pangenomic Graphs

Parents

Publications

49

A draft human pangenome reference

Wen‐Wei Liao, Mobin Asri, Jana Ebler et al. · Nature · 2023 · 1.1K citations · Full text

, , +17

Ensembl 2023

Fergal J. Martin, M Ridwan Amode, Alisha Aneja et al. · Nucleic Acids Research · 2022 · 1.1K citations · Full text

, , +14

The design and construction of reference pangenome graphs with minigraph

Heng Li, Xiaowen Feng, Chong Chu · Genome biology · 2020 · 500 citations · Full text

, , +17

MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis

David Vallenet, Alexandra Calteau, Mathieu Dubois et al. · Nucleic Acids Research · 2019 · 349 citations · Full text

, , +13

Genotyping structural variants in pangenome graphs using the vg toolkit

Glenn Hickey, David N. Heller, Jean Monlong et al. · Genome biology · 2020 · 343 citations · Full text

, , +17

1–5 of 49

Authors

531

  1. EG
    Erik Garrison

    University of California, Santa Cruz, United States

    20 publications · 3.2K citations

    17

    h-index

  2. BP
    Benedict Paten

    University of California, Santa Cruz, United States

    13 publications · 2.3K citations

    12

    h-index

  3. AG
    Andrea Guarracino

    University of Tennessee Health Science Center, United States

    11 publications · 2.3K citations

    11

    h-index

  4. JM
    Jordan M. Eizenga

    University of California, Santa Cruz, United States

    12 publications · 2.3K citations

    11

    h-index

  5. AM
    Adam M. Novak

    University of California, Santa Cruz, United States

    12 publications · 2.3K citations

    11

    h-index

1–5 of 531

Institutions

211

  1. University of Tennessee Health Science Center

    Memphis, United States

    14 h-index

    52 publications

    13.4K citations

  2. University of California, Santa Cruz

    Santa Cruz, United States

    12 h-index

    133 publications

    36K citations

  3. Human Technopole

    Milan, Italy

    11 h-index

    13 publications

    2.6K citations

  4. University of Tübingen

    Tübingen, Germany

    9 h-index

    13 publications

    2.7K citations

  5. Ministry of Agriculture and Rural Affairs

    Beijing, China

    8 h-index

    46 publications

    5.3K citations

  6. Harvard University

    Cambridge, United States

    8 h-index

    20 publications

    6.9K citations

  7. Institute of Genetics and Biophysics

    Naples, Italy

    7 h-index

    12 publications

    3.7K citations

  8. National Institute of Standards and Technology

    Gaithersburg, United States

    7 h-index

    19 publications

    6.6K citations

1–8 of 211

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 8 publications · 346 citations

    8

    h-index

  2. Bioinformatics

    6 publications · 444 citations

    6

    h-index

  3. Nature Genetics

    4 publications · 793 citations

    4

    h-index

  4. Genome biology

    4 publications · 955 citations

    4

    h-index

  5. Nature Communications

    3 publications · 306 citations

    3

    h-index

1–5