Concepedia

Phylogenomic analyses reveal a single deep-water colonisation in Patellogastropoda

Ying Qi, Zhaoyan Zhong, Xu Liu, Xing He, Yadong Zhou, Lili Zhang, Chong Chen, Katrin Linse, Jian‐Wen Qiu, Jin Sun

Molecular Phylogenetics and Evolution · 2023 · 10 citations · 30 references

DOI

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References

30

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis · Bioinformatics · 2014 · 34.3K citations · Full text

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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Bùi Quang Minh, Heiko A. Schmidt, Olga Chernomor et al. · Molecular Biology and Evolution · 2020 · 16.8K citations · Full text

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CD-HIT: accelerated for clustering the next-generation sequencing data

LiMin Fu, Beifang Niu, Zhengwei Zhu et al. · Bioinformatics · 2012 · 11.8K citations · Full text

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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Brian J. Haas, Alexie Papanicolaou, Moran Yassour et al. · Nature Protocols · 2013 · 9.1K citations · Full text

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OrthoFinder: phylogenetic orthology inference for comparative genomics

David Emms, Steven Kelly · Genome biology · 2019 · 8K citations · Full text

, , +17