Nucleic Acids Research · 2023 · 355 citations · 41 references
Life SciencesBioinformaticsMolecular BiologyGenomicsChemogenomics DatabasesGenebank ManagementGenomic DatabasesPathway DatabasesReference Database CurationTaxonomic DatabasesBiochemical Pathway DatabasesChemical Library DatabasesCurated Genome DatabasesDatabase Management For GenebanksGene Catalog DatabasesMicrobial Reference DatabasesSoftware Resources
The National Center for Biotechnology Information (NCBI) provides online information resources for biology, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstracts published in life science journals. NCBI provides search and retrieval operations for most of these data from 35 distinct databases. The E-utilities serve as the programming interface for most of these databases. Resources receiving significant updates in the past year include PubMed, PMC, Bookshelf, SciENcv, the NIH Comparative Genomics Resource (CGR), NCBI Virus, SRA, RefSeq, foreign contamination screening tools, Taxonomy, iCn3D, ClinVar, GTR, MedGen, dbSNP, ALFA, ClinicalTrials.gov, Pathogen Detection, antimicrobial resistance resources, and PubChem. These resources can be accessed through the NCBI home page at https://www.ncbi.nlm.nih.gov.
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STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
Minimap2: pairwise alignment for nucleotide sequences
Heng Li · Bioinformatics · 2018 · 16.8K citations · Full text
InterProScan 5: genome-scale protein function classification
Philip Jones, David Binns, Hsin-Yu Chang et al. · Bioinformatics · 2014 · 10K citations · Full text
Life Sciences, Bioinformatics, High-performance Computing +8