Concepedia

A Structure-based Data Set of Protein-peptide Affinities and itsNonredundant Benchmark: Potential Applications in ComputationalPeptidology

Shaozhou Wang, Haiyang Ye, Shuyong Shang, Zilong Li, Yue Peng, Peng Zhou

Current Medicinal Chemistry · 2023 · 16 citations · 21 references

Abstract

The PpI[S/A]<sub>DS</sub> set and PpI[S/A]<sub>BM</sub> benchmark can be considered a valuable data source in the computational peptidology community, aiming to relate the affinity to structure for PpIs.

References

21

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Biological Database, Biochemistry, Structural Bioinformatics +12

Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega

Fabian Sievers, Andreas Wilm, David Dineen et al. · Molecular Systems Biology · 2011 · 15.7K citations · Full text

Structural Bioinformatics, Scalable Generation, Natural Sciences +11

The PDBbind Database: Methodologies and Updates

Renxiao Wang, Xueliang Fang, Yipin Lu et al. · Journal of Medicinal Chemistry · 2005 · 913 citations

Engineering, Pdbbind Database, Big Data Indexing +19

The Structural Basis of Peptide-Protein Binding Strategies

Nir London, Dana Movshovitz‐Attias, Ora Schueler‐Furman · Structure · 2010 · 424 citations

Biochemistry, Protein Folding, Peptide Engineering +5

A structure‐based benchmark for protein–protein binding affinity

Panagiotis L. Kastritis, Iain H. Moal, Howook Hwang et al. · Protein Science · 2011 · 318 citations · Full text

Protein–protein Binding Affinity, Protein-protein Complexes, Unbound Components +14