Concepedia

lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation

Tine Claeys, Tim Van Den Bossche, Yasset Pérez‐Riverol, Kris Gevaert, Juan Antonio Vizcaíno, Lennart Martens

Nature Communications · 2023 · 47 citations · 11 references

DOIFull text

Open access

Abstract

Public proteomics data often lack essential metadata, limiting its potential. To address this, we present lesSDRF, a tool to simplify the process of metadata annotation, thereby ensuring that data leave a lasting, impactful legacy well beyond its initial publication.

References

11

Probability-based protein identification by searching sequence databases using mass spectrometry data

David N. Perkins, Darryl Pappin, David M. Creasy et al. · Electrophoresis · 1999 · 8.2K citations

Highly accurate protein structure prediction for the human proteome

Kathryn Tunyasuvunakool, Jonas Adler, Zachary Wu et al. · Nature · 2021 · 3.1K citations · Full text

MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics

Andy T. Kong, Felipe da Veiga Leprevost, Dmitry M. Avtonomov et al. · Nature Methods · 2017 · 2.4K citations · Full text

, , +6

MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments

Meena Choi, Ching-Yun Chang, Timothy Clough et al. · Bioinformatics · 2014 · 1.1K citations

Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning

Siegfried Gessulat, Tobias Schmidt, Daniel P. Zolg et al. · Nature Methods · 2019 · 929 citations · Full text

, , +11