Concepedia

Nightmare or delight: Taxonomic circumscription meets reticulate evolution in the phylogenomic era

Ze‐Tao Jin, Richard G.J. Hodel, Dai‐Kun Ma, Hui Wang, Guang‐Ning Liu, Binbin Liu

Molecular Phylogenetics and Evolution · 2023 · 28 citations · 90 references

DOI

Concepts

References

90

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations

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Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis · Bioinformatics · 2014 · 34.3K citations · Full text

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BLAST+: architecture and applications

Christiam Camacho, George Coulouris, Vahram Avagyan et al. · BMC Bioinformatics · 2009 · 23.2K citations · Full text

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Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

Matthew D. Kearse, Richard Moir, Amy Wilson et al. · Bioinformatics · 2012 · 20.8K citations · Full text

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