Microbiology Spectrum · 2023 · 25 citations · 71 references
Life SciencesInfectious DiseasesMicrobiologyAntimicrobial ResistanceMedical MicrobiologyMolecular EpidemiologyAntibiotic ResistanceBacterial EpidemiologyBacterial InfectionsCarbapenem ResistanceGenomic EpidemiologyMultidrug ResistanceBacterial Multidrug ResistanceDrug Resistance Pattern AnalysisGenomic Epidemiology Of ResistanceKlebsiella Pneumoniae CarbapenemaseKlebsiella Pneumoniae ResistanceMultidrug Resistance AnalysisMultidrug Resistance DeterminantsPhenotypic Convergence
In this study, we address the ongoing epidemic of carbapenem-resistant Klebsiella pneumoniae, a critical threat to public health. The alarming genotypic and phenotypic convergence of multidrug resistance and virulence highlights the increasingly aggravated threat posed by K. pneumoniae. This calls for a combined effort of physicians and scientists to study the potential mechanisms and establish guidelines for antimicrobial therapies and interventions. To this end, we have conducted a genomic epidemiology and characterization study using isolates collected in a coordinated effort of multiple hospitals. Innovative biological discoveries of clinical importance are made and brought to the attention of clinical researchers and practitioners. This study presents an important advance in the application of genomics and statistics to recognize, understand, and control an infectious disease of concern.
71
R: A Language and Environment for Statistical Computing
R Core Team · 2000 · 353K citations · Full text
Natural Sciences, Computer Science, Statistical Computing +10
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen, Yanqing Zhou, Yaru Chen et al. · Bioinformatics · 2018 · 29.7K citations · Full text
Prokka: rapid prokaryotic genome annotation
Torsten Seemann · Bioinformatics · 2014 · 19.6K citations