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Sites of transcription initiation drive mRNA isoform selection

Carlos Alfonso-Gonzalez, Ivano Legnini, Sarah Holec, Laura Arrigoni, Hasan Can Ozbulut, Fernando Mateos, David Koppstein, Agnieszka Rybak‐Wolf, Ulrike Bönisch, Nikolaus Rajewsky,

Cell · 2023 · 79 citations · 96 references

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References

96

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 94.7K citations · Full text

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 53.2K citations · Full text

Minimap2: pairwise alignment for nucleotide sequences

Heng Li · Bioinformatics · 2018 · 15.5K citations · Full text

deepTools2: a next generation web server for deep-sequencing data analysis

Fidel Ramírez, Devon Ryan, Björn Grüning et al. · Nucleic Acids Research · 2016 · 8.5K citations · Full text

Massively parallel digital transcriptional profiling of single cells

Grace Zheng, Jessica M. Terry, Phillip Belgrader et al. · Nature Communications · 2017 · 7.4K citations · Full text