Transcriptome and metabolome profiling reveals key pathways and metabolites involved in defense against Verticillium dahliae in upland cotton

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Life Sciences, Bioinformatics, Biostatistics +15

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim, Ben Langmead, Steven L. Salzberg · Nature Methods · 2015 · 26.1K citations · Full text

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StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

Mihaela Pertea, Geo Pertea, Corina Antonescu et al. · Nature Biotechnology · 2015 · 15.5K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +10

Gene ontology analysis for RNA-seq: accounting for selection bias

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Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary

X. Mao, Tommaso Cai, J. G. Olyarchuk et al. · Computer applications in the biosciences · 2005 · 4.2K citations · Full text

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