The Crop Journal · 2022 · 23 citations · 51 references
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 64.7K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 60.7K citations · Full text
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
Shaun Purcell, Benjamin M. Neale, Katherine EO Todd-Brown et al. · The American Journal of Human Genetics · 2007 · 34.9K citations · Full text
Genome-wide Association Study, Whole-genome Association, Linkage Disequilibrium +12
The variant call format and VCFtools
Petr Danecek, Adam Auton, Gonçalo R. Abecasis et al. · Bioinformatics · 2011 · 16.8K citations · Full text
Prediction of Total Genetic Value Using Genome-Wide Dense Marker Maps
T.H.E. Meuwissen, Ben J. Hayes, Michael E. Goddard · Genetics · 2001 · 7.7K citations · Full text