Chaos An Interdisciplinary Journal of Nonlinear Science · 2022 · 23 citations · 34 references
EngineeringBiologyMathematicsComplex SystemsDynamical SystemsStochastic ProcessesChaos TheoryDynamic Systems ModelingMarkov ChainsMarkov ProcessesNetwork DynamicsStochastic NetworksChaos In Biological SystemsChaos In Dynamical SystemsNetwork IntersectionsSensitive Dependence On Initial ConditionsStochastic Dynamical SystemsStochastic Processes In BiologyStochastic State SwitchingUnstable Manifolds
Key features of biological activity can often be captured by transitions between a finite number of semi-stable states that correspond to behaviors or decisions. We present here a broad class of dynamical systems that are ideal for modeling such activity. The models we propose are chaotic heteroclinic networks with nontrivial intersections of stable and unstable manifolds. Due to the sensitive dependence on initial conditions, transitions between states are seemingly random. Dwell times, exit distributions, and other transition statistics can be built into the model through geometric design and can be controlled by tunable parameters. To test our model's ability to simulate realistic biological phenomena, we turned to one of the most studied organisms, C. elegans, well known for its limited behavioral states. We reconstructed experimental data from two laboratories, demonstrating the model's ability to quantitatively reproduce dwell times and transition statistics under a variety of conditions. Stochastic switching between dominant states in complex dynamical systems has been extensively studied and is often modeled as Markov chains. As an alternative, we propose here a new paradigm, namely, chaotic heteroclinic networks generated by deterministic rules (without the necessity for noise). Chaotic heteroclinic networks can be used to model systems with arbitrary architecture and size without a commensurate increase in phase dimension. They are highly flexible and able to capture a wide range of transition characteristics that can be adjusted through control parameters.
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Differentiable dynamical systems
Stephen T. Smale · Bulletin of the American Mathematical Society · 1967 · 3K citations · Full text
Structural Properties of the Caenorhabditis elegans Neuronal Network
Lav R. Varshney, Beth L. Chen, Eric Paniagua et al. · PLoS Computational Biology · 2011 · 932 citations · Full text
Life Sciences, Biology, Neuroscience +17
Mapping Sub-Second Structure in Mouse Behavior
Alexander B. Wiltschko, Matthew J. Johnson, Giuliano Iurilli et al. · Neuron · 2015 · 863 citations · Full text
Dissecting a circuit for olfactory behaviour in Caenorhabditis elegans
Sreekanth H. Chalasani, Nikos Chronis, Makoto Tsunozaki et al. · Nature · 2007 · 696 citations
Life Sciences, Biology, Neuroscience +14