The Journal of Chemical Physics · 2022 · 47 citations · 78 references
Natural SciencesChemistryPhysicsComputational BiophysicsComputational ChemistryMachine LearningCoarse-grained ModelingMolecular DynamicsMolecular MechanicsMolecular SimulationPotential Energy SurfacesStatistical MechanicsCoarse-grained Force FieldsCoarse-grained PotentialsFree Energy SurfacesMachine Learning Potential Energy SurfacesMachine Learning PotentialsMany-body DynamicsPotential Of Mean ForceRelative Entropy
Neural network (NN) potentials are a natural choice for coarse-grained (CG) models. Their many-body capacity allows highly accurate approximations of the potential of mean force, promising CG simulations of unprecedented accuracy. CG NN potentials trained bottom-up via force matching (FM), however, suffer from finite data effects: They rely on prior potentials for physically sound predictions outside the training data domain, and the corresponding free energy surface is sensitive to errors in the transition regions. The standard alternative to FM for classical potentials is relative entropy (RE) minimization, which has not yet been applied to NN potentials. In this work, we demonstrate, for benchmark problems of liquid water and alanine dipeptide, that RE training is more data efficient, due to accessing the CG distribution during training, resulting in improved free energy surfaces and reduced sensitivity to prior potentials. In addition, RE learns to correct time integration errors, allowing larger time steps in CG molecular dynamics simulation, while maintaining accuracy. Thus, our findings support the use of training objectives beyond FM, as a promising direction for improving CG NN potential's accuracy and reliability.
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On Information and Sufficiency
S. Kullback, R. A. Leibler · The Annals of Mathematical Statistics · 1951 · 20K citations · Full text