Frontiers in Microbiology · 2022 · 35 citations · 48 references
Life SciencesBiotechnologyMicrobiologyMicrobial EcologyMicrobial MetabolismMicrobial TaxonomyMicrobial Community DynamicsMicrobial Community ProfilingMicrobial Consortia EngineeringMicrobial DiversityAromatic HydrocarbonsBacterial EnrichmentCommunity SuccessionHydrocarbon-degrading MicrobesHydrocarbon-degrading MicroorganismsIsolationMicrobial Community SuccessionOil Degradation
Microbial community succession during the enrichment of crude-oil-degrading bacteria was analyzed using Illumina high-throughput sequencing to guide bacterial isolation and construction of a bacterial consortium. Community change occurred in 6 days; the most abundant phylum changed from Proteobacteria to Actinobacteria; the most abundant genera were Dietzia and unspecified_Idiomarinaceae . Two crude oil-degrading strains, Rhodococcus sp. OS62-1 and Dietzia sp. OS33, and one weak-crude-oil-degrading strain, Pseudomonas sp. P35, were isolated. A consortium comprising Rhodococcus sp. OS62-1 and Pseudomonas sp. P35 showed the highest crude-oil-degrading efficiency, reaching 85.72 ± 3.21% within 7 days, over a wide pH range (5–11) and salinity (0–80 g·L −1 ). Consumption of saturated hydrocarbons, aromatic hydrocarbons, and resins was greater by the consortium than by a single strain, as was degradation of short-chain-alkanes (C 13 –C 17 ) according to gas-chromatography. The bacterial consortium provides technical support for bioremediation of crude oil pollution.
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DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods · 2016 · 36.3K citations
Fatihah Sujá, Fazli Rahim, Mohd Raihan Taha et al. · International Biodeterioration & Biodegradation · 2014 · 269 citations