Microbiology Spectrum · 2022 · 15 citations · 18 references
Life SciencesInfectious DiseasesMicrobiologyAntimicrobial ResistanceBacteriologyDiagnostic MicrobiologyAntibiotic ResistanceAntibiotic Resistance MechanismsAntimicrobial Susceptibility TestingBeta-lactam ResistanceCarbapenem ResistanceResistance SurveillanceAmpc Beta-lactamase-mediated ResistanceAntimicrobial Resistance Gene DetectionCarbapenem Resistance MechanismsCarbapenem-resistant EnterobacteralesDiagnostic Detection Of Resistance EnzymesExtended-spectrum Beta-lactamasesPhenotypic Resistance DetectionResistance Mechanism Detection
Antimicrobial resistance is a growing public health threat of broad concern worldwide. Timely detection of antibiotic resistance mechanisms can help to monitor and to curb the spread of resistant bacteria within the hospital setting as well as in the environment. In this work we report an accurate and affordable method to phenotypically identify difficult-to-detect resistance determinants in highly resistant (carbapenemase-producing) bacteria. This method may be implemented in any diagnostic microbiology lab and may reduce the underreporting of relevant resistance mechanisms.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
The Comprehensive Antibiotic Resistance Database
Andrew G. McArthur, Nicholas Waglechner, Fazmin Nizam et al. · Antimicrobial Agents and Chemotherapy · 2013 · 2.3K citations · Full text
Hervé Boutal, Anaïs Vogel, Sandrine Bernabeu et al. · Journal of Antimicrobial Chemotherapy · 2017 · 222 citations · Full text