Heliyon · 2022 · 93 citations · 79 references
PharmacyChemistryMedicinal ChemistryDrug DesignStructural BiologyStructure-activity RelationshipsMolecular DockingMolecular ModelingMolecular StructureProtein DockingProtein-ligand DockingStructure-activity Relationship AnalysisDocking ValidationDocking-based Drug DesignEnergy Band GapEnergy Gap AnalysisEnergy-based DockingMolecular Docking OptimizationMolecular Docking ValidationTopology Of Potential Energy Surfaces
) space group. The topological and Hirshfeld surface analysis revealed that covalent, non-covalent and intermolecular H-bonding interactions, and electron delocalization exist in the molecular framework. Higher binding score (-6.966 kcal/mol) of IDPC at the active site of SARS-COVID main protease compared to other proteases suggests that IDPC has the potential of blocking polyprotein maturation. H-bonding and π-cationic and interactions of the phenyl ring and carbonyl oxygen of the ligand indicate the effective inhibiting potential of the compound against the virus.
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VMD: Visual molecular dynamics
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