Microbiology Spectrum · 2022 · 10 citations · 31 references
AgricultureMicrobiologySoil SciencesMicrobial EcologySoil BiologySoil MicrobiologyPlant MicrobiomePlant-associated Microbial CommunitiesRhizosphere BiologyRhizosphere MicrobiologySoil Microbial PhysiologySoil PathogensBiocontrol Of Soilborne PathogensFungicide TreatmentsHypervariable Region AnalysisRhizosphere Bacterial CommunitiesRhizosphere BiodiversitySoil Microbial Community StructureSoil MicrobiomesSoil-borne Bacterial Pathogens
Pythium myriotylum and Ralstonia solanacearum cause soft rot disease and bacterial wilt, respectively. In this study, we used the bacterial 16S V3–V4 hypervariable region of the 16S rRNA region to investigate microbe compositions in healthy and diseased ginger soil and find out the influence of the well-known biocontrol agent B. velezensis and the fungicide Etridiazole on soil microbes and ginger productivity.
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DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods · 2016 · 36.3K citations
Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text
The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
Pelin Yilmaz, Laura Wegener Parfrey, Pablo Yarza et al. · Nucleic Acids Research · 2013 · 4.1K citations · Full text