Microbiology Spectrum · 2022 · 40 citations · 36 references
Life SciencesInfectious DiseasesMicrobiologyAntimicrobial ResistanceBacteriologyMedical MicrobiologyAntibiotic ResistanceAntimicrobial Resistance GenomicsBacterial EpidemiologyBacterial InfectionsBacterial Virulence FactorsCarbapenem ResistanceAntimicrobial Resistance PatternsBacterial Virulence GenesComparative Antimicrobial ResistanceComparative Genomics Of ResistanceExtended-spectrum Beta-lactamasesKlebsiella Pneumoniae ResistancePathogenic DeterminantsVirulence Determinants
To date, studies comparing the genomic characteristics of hospital- and community-acquired hvKp were very few in India. In this study, we analyzed the clinical and genomic characteristics of hvKp isolates from hospital and community settings. ST2096 was found as the most common ST along with novel STs ST231 and ST43. Our study also revealed the genome is simultaneously carrying AMR as well as virulence genes in isolates from both settings, highlighting the emergence of MDR hvKp STs integrated with virulence genes in both community and health care settings. Thus, hvKp may present a serious global threat, and essential steps are needed to prevent its further dissemination.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
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Prokka: rapid prokaryotic genome annotation
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A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
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