Active compound analysis of Ziziphus jujuba cv. Jinsixiaozao in different developmental stages using metabolomic and transcriptomic approaches

HTSeq—a Python framework to work with high-throughput sequencing data

Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text

Life Sciences, Bioinformatics, Biology +11

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

Chen Xie, Xizeng Mao, Jiaju Huang et al. · Nucleic Acids Research · 2011 · 5.5K citations · Full text

Life Sciences, Bioinformatics, Genetics +15

A Novel Integrated Method for Large-Scale Detection, Identification, and Quantification of Widely Targeted Metabolites: Application in the Study of Rice Metabolomics

Wei Chen, Liang Gong, Zilong Guo et al. · Molecular Plant · 2013 · 1.9K citations · Full text

Life Sciences, Biochemistry, Crop Sciences +17

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

Hugo Varet, Loraine Brillet-Guéguen, Jean‐Yves Coppée et al. · PLoS ONE · 2016 · 1.4K citations · Full text

Life Sciences, Bioinformatics, Biostatistics +16

Integrated Analysis of Metabolite and Transcript Levels Reveals the Metabolic Shifts That Underlie Tomato Fruit Development and Highlight Regulatory Aspects of Metabolic Network Behavior

Fernando Carrari, Charles Baxter, Björn Usadel et al. · PLANT PHYSIOLOGY · 2006 · 490 citations · Full text

Life Sciences, Plant Biology, Plant Sciences +17