Limnology and Oceanography Letters · 2022 · 34 citations · 26 references
Natural ResourcesMarine BiologyMarine SciencesFish BiologyFish EcologyMarine EcologyFish Reproductive BiologyFish Reproductive EcologyMarine Fish BiologyAbundance Data AnalysisAbundance DistributionBroadcastEnvironmental Dna (Edna)Fish Abundance EstimationFish Assemblage DynamicsFish Assemblage MonitoringMarine Environmental Dna
Abstract Many factors influence how environmental DNA (eDNA) abundance varies in natural environments. One of the least studied contributors to eDNA variation is that of reproduction. Marine organisms that broadcast spawn are expected to shed increased quantities of DNA in association with the release of gametes and the elevated levels of activity associated with reproduction. To test this hypothesis at the community level, we present a year‐long eDNA time‐series of a temperate sea‐shelf fish assemblage combined with adult fish and ichthyoplankton abundance data. Our results show that eDNA is associated with species abundance estimated by conventional fish surveys at all life stages (adult, larval, and egg), and was on average 2.3‐fold more abundant during predicted fish reproductive periods.
26
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods · 2016 · 36.3K citations
Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text
Using DECIPHER v2.0 to Analyze Big Biological Sequence Data in R
S. Wright Erik · The R Journal · 2016 · 1.1K citations · Full text