mSystems · 2022 · 20 citations · 71 references
Life SciencesEcologyMicrobiologyMarine MicrobiologyMicrobial EcologyMicrobiome ResearchDisease EcologyMarine BacteriologyMicrobiome DiversityPhyllosphere EcologyPlant MicrobiomePlant-associated Microbial CommunitiesBacterial Community EcologyDisease Prevalence AnalysisDisease Prevalence PatternsDisease Progression PredictionMarine MicrobiomesPhyllosphere MicrobiologyPhyllosphere MicrobiomesPlant Cell Wall Degradation
(wasting disease). We link bacterial members of phyllosphere tissues to the prevalence of wasting disease across the broadest geographic range to date for a marine plant microbiome-disease study (3,100 km). We identify Cellvibrionaceae, plant cell wall degraders, enriched (up to 61% relative abundance) within lesion tissue, which suggests this group may be playing important roles in disease progression. These findings suggest inclusion of microbiomes in marine disease studies will improve our ability to predict ecological outcomes of infection across variable landscapes spanning thousands of kilometers.
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Scikit-learn: Machine Learning in Python
Fabián Pedregosa, Gaël Varoquaux, Alexandre Gramfort et al. · arXiv (Cornell University) · 2012 · 63.7K citations · Full text
FLASH: fast length adjustment of short reads to improve genome assemblies
Tanja Magoč, Steven L. Salzberg · Bioinformatics · 2011 · 15.7K citations · Full text