Concepedia

MycoSNP: A Portable Workflow for Performing Whole-Genome Sequencing Analysis of Candida auris

Ujwal R. Bagal, John H. Phan, Rory M. Welsh, Elizabeth Misas, Darlene Wagner, Lalitha Gade, Anastasia P. Litvintseva, Christina A. Cuomo, Nancy A. Chow

Methods in molecular biology · 2022 · 44 citations · 33 references

DOI

Concepts

References

33

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text

, , +14

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna, Matthew G. Hanna, Eric Banks et al. · Genome Research · 2010 · 30K citations · Full text

, , +17

A framework for variation discovery and genotyping using next-generation DNA sequencing data

Mark A. DePristo, Eric Banks, Ryan Poplin et al. · Nature Genetics · 2011 · 12.4K citations · Full text

, , +14

Base-Calling of Automated Sequencer Traces Using <i>Phred.</i> II. Error Probabilities

Brent Ewing, Phil Green · Genome Research · 1998 · 5.5K citations · Full text

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