Concepedia

Historical specimens and the limits of subspecies phylogenomics in the New World quails (Odontophoridae)

Jessie F. Salter, Peter A. Hosner, Whitney L. E. Tsai, John E. McCormack, Edward L. Braun, Rebecca T. Kimball, Robb T. Brumfield, Brant C. Faircloth

Molecular Phylogenetics and Evolution · 2022 · 25 citations · 55 references

DOI

Concepts

References

55

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

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Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh, Daron M. Standley · Molecular Biology and Evolution · 2013 · 48.3K citations · Full text

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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich, Sergey Nurk, Dmitry Antipov et al. · Journal of Computational Biology · 2012 · 27.2K citations

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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón · Bioinformatics · 2009 · 13.6K citations · Full text

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