Concepedia

Core transcription programs controlling injury-induced neurodegeneration of retinal ganglion cells

Feng Tian, Yuyan Cheng, Songlin Zhou, Qianbin Wang, Aboozar Monavarfeshani, Kun Gao, Weiqian Jiang, Riki Kawaguchi, Qing Wang, Mingjun Tang,

Neuron · 2022 · 123 citations · 89 references

Open access

Concepts

Life SciencesMolecular BiologyNeuroscienceGene ExpressionMolecular NeuroscienceNeurodegenerationNeurodegeneration MechanismsNeuronal Gene ExpressionRetinal DegenerationRetinal Ganglion CellsRetinal NeurobiologyRetinal NeuroscienceGanglion Cell LossInjury-induced Gene ExpressionRetinal Ganglion Cell ApoptosisRetinal Ganglion Cell BiologyRetinal Ganglion Cell Injury ResponseRetinal Ganglion Cell Transcriptional RegulationRetinal Neurodegeneration

References

89

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

Life Sciences, Bioinformatics, Biostatistics +15

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

Life Sciences, Bioinformatics, Molecular Biology +11

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

Life Sciences, Bioinformatics, Biostatistics +14

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text

Life Sciences, Bioinformatics, Genetics +14