Cell Reports Medicine · 2022 · 44 citations · 68 references
Life SciencesImmunologyOncologyCancer ImmunologyImmunotherapyMolecular OncologyAntitumor T Cell ResponsesCancer ImmunotherapyInnate Immune ActivationInnate Immune Signaling PathwaysNatural Killer Cell BiologyNatural Killer Cell FunctionAdaptive Immune EscapeCd8 Positive T CellsCrispr-cas9 Genome EditingCrispr-cas9 KnockoutCrispr-cas9 Knockout ModelsInnate Antitumor ImmunityMhc Class I MoleculesRegulation By E3 Ubiquitin Ligases
T cell killing. This occurs in a tumor necrosis factor (TNF)-dependent manner, causing loss of A20 and non-canonical IKK complexes from TNF receptor complex I. A small-molecule RNF31 inhibitor sensitizes colon carcinoma organoids to TNF and greatly enhances bystander killing of MHC antigen-deficient tumor cells. These results merit exploration of RNF31 inhibition as a clinical pharmacological opportunity for immunotherapy-refractory cancers.
68
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Guangchuang Yu, Li-Gen Wang, Yanyan Han et al. · OMICS A Journal of Integrative Biology · 2012 · 38.3K citations
HTSeq—a Python framework to work with high-throughput sequencing data
Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text