International Journal of Molecular Sciences · 2022 · 11 citations · 41 references
Life SciencesCell BiologyMolecular BiologyBone MetabolismGene ExpressionTranscriptomicsBone FormationMacrophage BiologyOsteoclast BiologySingle-cell Rna Sequencing AnalysisBone Marrow - Derived CellsCrispr-cas Genome EditingCrispr-cas9 Genome EditingCrispr-cas9 KnockoutMonocyte-derived MacrophagesMultinucleated Giant CellsRankl SignalingRankl-mediated Osteoclastogenesis
Osteoclasts are derived from hematopoietic stem cells. Monocyte preosteoclasts obtain resorbing activity via cell–cell fusion to generate multinucleated cells. However, the mechanisms and molecules involved in the fusion process are poorly understood. In this study, we performed RNA sequencing with single nucleated cells (SNCs) and multinucleated cells (MNCs) to identify the fusion-specific genes. The SNCs and MNCs were isolated under the same conditions during osteoclastogenesis with the receptor activator of nuclear factor-κB ligand (RANKL) administration. Based on this analysis, the expression of seven genes was found to be significantly increased in MNCs but decreased in SNCs, compared to that in bone marrow-derived macrophages (BMMs). We then generated knockout macrophage cell lines using a CRISPR-Cas9 genome-editing tool to examine their function during osteoclastogenesis. Calcrl-, Marco-, or Ube3a-deficient cells could not develop multinucleated giant osteoclasts upon RANKL stimulation. However, Tmem26-deficient cells fused more efficiently than control cells. Our findings demonstrate that Calcrl, Marco, and Ube3a are novel determinants of osteoclastogenesis, especially with respect to cell fusion, and highlight potential targets for osteoporosis therapy.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Yifu Qiu, Khoa D. Nguyen, Justin I. Odegaard et al. · Cell · 2014 · 858 citations · Full text