mSphere · 2022 · 11 citations · 66 references
Veterinary MedicineInfectious DiseasesMolecular BiologyHost-pathogen InteractionsParasitologyProtozoologyParasite Life CyclesParasitic Disease PathogenesisParasitic PathogenesisProtozoan Host-parasite InteractionsProtozoan PathogenesisVector-host InteractionsBromodomain ProteinsCell Surface ProteinsHost Stage AdaptationHost-protozoan Metabolic InteractionsLife Cycle ProgressionProtozoan Parasite Life CyclesTrypanosomatid-host InteractionsTrypanosome Infections
The parasite Trypanosoma brucei is the causative agent of human and animal African trypanosomiasis (sleeping sickness). Trypanosomiasis, which affects humans and cattle, is fatal if untreated. Existing drugs have significant side effects. Thus, these parasites impose a significant human and economic burden in sub-Saharan Africa, where trypanosomiasis is endemic. T. brucei cycles between the mammalian host and a tsetse fly vector, and parasites undergo huge changes in morphology and metabolism to adapt to different hosts. Here, we show that DNA-interacting bromodomain protein 3 (Bdf3) shows changes in occupancy at its binding sites as parasites transition from the bloodstream to the insect stage. Additionally, a new binding site appears near the locus responsible for remodeling of parasite surface proteins during transition to the insect stage. Understanding the mechanisms behind host adaptation is important for understanding the life cycle of the parasite.
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BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang, Tao Liu, Clifford A. Meyer et al. · Genome biology · 2008 · 19.9K citations · Full text
Min Xiu, Juanjuan Xing, Shaoqing Yu et al. · Cellular Physiology and Biochemistry · 2017 · 5.8K citations · Full text
Chromatin Structure: A Repeating Unit of Histones and DNA
Roger D. Kornberg · Science · 1974 · 2.6K citations